A result at last... This is how it looks right now - the clustered molecular environment around the cytosine-moiety in my collection of complexes. Not very pretty - have to work on that. Behold:
Another day at the institute. My helper is not here which gives me a feeling of freedom. Still I wonder sometimes what I'm really doing, and it would be good to have someone to ask for opinions. I hope he likes the new idea I have thought out - massive clustering and fitting of atoms to a common coordinate system. This was a bit inspired by an article by Kuttner et al.